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Evolutionary and Spatiotemporal Analysis Reveal Multiple Introductions and Cryptic Transmission of Sars-Cov-2 VOC/VOI in Malta
MetaCompass: Reference-guided Assembly of Metagenomes
The pan-microbiome profiling system Taxa4Meta identifies clinical dysbiotic features and classifies diarrheal disease
Evolutionary and spatiotemporal analyses reveal multiple introductions and cryptic transmission of SARS-CoV-2 VOC/VOI in Malta
Olivar: fully automated and variant aware primer design for multiplex tiled amplicon sequencing of pathogen genomes (preprint)
Ultra-high throughput mapping of genetic design space
Alterations to the gut microbiome after sport-related concussion in a collegiate football players cohort: A pilot study
Current progress and open challenges for applying deep learning across the biosciences
Direct Comparison of RT-ddPCR and Targeted Amplicon Sequencing for SARS-CoV-2 Mutation Monitoring in Wastewater (preprint)
Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data
Infectious severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in exhaled aerosols and efficacy of masks during early mild infection
Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters
Notes from the field: early evidence of the SARS-CoV-2 B. 1.1. 529 (Omicron) variant in community wastewater—United States, November--December 2021
SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning
Systematic Analysis of Mobile Genetic Elements Mediating $β$-Lactamase Gene Amplification in Noncarbapenemase-Producing Carbapenem-Resistant Enterobacterales Bloodstream Infections
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms
Alterations to the gut microbiome after sport-related concussion in a collegiate football players cohort
An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates
Emu: Species-Level Microbial Community Profiling for Full-Length Nanopore 16S Reads
Fr578 ORAL TANNINS REDUCE PROINFLAMMATORY CYTOKINES ASSOCIATED WITH DIARRHEA AND PNEUMONIA IN HOSPITALIZED COVID-19 PATIENTS.
High confidence identification of intra-host single nucleotide variants for person-to-person influenza transmission tracking in congregate settings
Infectious SARS-CoV-2 in Exhaled Aerosols and Efficacy of Masks During Early Mild Infection (preprint)
Intrahost-diversity of influenza A virus in upper and lower respiratory tract derived samples from a college community
Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters (preprint)
Natural tannin extracts supplementation for COVID-19 patients (TanCOVID): a structured summary of a study protocol for a randomized controlled trial
Role of miR-2392 in driving SARS-CoV-2 infection
SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission
SeqScreen: Accurate and Sensitive Functional Screening of Pathogenic Sequences via Ensemble Learning
The Great Deceiver: miR-2392's Hidden Role in Driving SARS-CoV-2 Infection (preprint)
Comprehensive multi-omics analysis reveals mitochondrial stress as a central biological hub for spaceflight impact
Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission (preprint)
Methods developed during the first National Center for Biotechnology Information Structural Variation Codeathon at Baylor College of Medicine
SeqScreen: a biocuration platform for robust taxonomic and biological process characterization of nucleic acid sequences of interest
Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018
Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station
Draft genome sequences from a novel clade of Bacillus cereus sensu lato strains, isolated from the International Space Station. Genome Announc 5: e00680-17
Draft Genome Sequences from a Novel Clade of Bacillus cereusáSensu Lato Strains, Isolated from the International Space Station
Gaurav Gupta
A new rhesus macaque assembly and annotation for next-generation sequencing analyses
Complete genome sequence of the quality control strain Staphylococcus aureus subsp. aureus ATCC 25923
Genome sequence of the attenuated Carbosap vaccine strain of Bacillus anthracis
A framework for human microbiome research
Deep sequencing of the oral microbiome reveals signatures of periodontal disease
GAGE: A critical evaluation of genome assemblies and assembly algorithms
Structure, function and diversity of the healthy human microbiome