Treangen Lab @ Rice
Treangen Lab @ Rice
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Todd Treangen
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Bakdrive: Identifying the Minimum Set of Bacterial Driver Species across Multiple Microbial Communities
Fast Processing and Querying of 170TB of Genomics Data via a Repeated And Merged Bloom Filter (RAMBO)
Fecal microbiota transplantation derived from Alzheimer's disease mice worsens brain trauma outcomes in young C57BL/6 mice
High confidence identification of intra-host single nucleotide variants for person-to-person influenza transmission tracking in congregate settings
Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters
Comparative metagenomic analysis of microbial taxonomic and functional variations in untreated surface and reclaimed waters used in irrigation applications
Synthetic DNA and biosecurity: Nuances of predicting pathogenicity and the impetus for novel computational approaches for screening oligonucleotides
MetaCarvel: linking assembly graph motifs to biological variants
RAMBO: Repeated And Merged Bloom Filter for Ultra-fast Multiple Set Membership Testing (MSMT) on Large-Scale Data
Sub-linear sequence search via a Repeated And Merged Bloom Filter (RAMBO): indexing 170 TB data in 14 hours
Hierarchically visualizing metagenome assembly graphs with metagenomescope
Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone
Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths
ScaffViz: visualizing metagenome assemblies
Novel computational methods for large scale genome comparison
M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species
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