Treangen Lab @ Rice
Treangen Lab @ Rice
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2164. Resistome patterns associated with vancomycin non-susceptibility in clinical Clostridioides difficile isolates
Taryn A Eubank
,
Anne J Gonzales-Luna
,
Blake M Hanson
,
Todd Treangen
,
Ashlee Earl
,
Kevin W Garey
KombOver: Efficient k-core and K-truss based characterization of perturbations within the human gut microbiome
Dr. Nicolae Sapoval
,
Marko Tanevski
,
Todd J Treangen
Leveraging Large Language Models for Predicting Microbial Virulence from Protein Structure and Sequence
Felix Quintana
,
Todd Treangen
,
Lydia Kavraki
One-pass diversified sampling with application to terabyte-scale genomic sequence streams
Benjamin Coleman
,
Benito Geordie
,
Li Chou
,
Dr. R.A. Leo Elworth
,
Todd Treangen
,
Anshumali Shrivastava
Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets
Bryce Kille
,
Dr. Yunxi Liu
,
Dr. Nicolae Sapoval
,
Dr. Michael Nute
,
Lawrence Rauchwerger
,
Nancy Amato
,
Todd J Treangen
Fast processing and querying of 170tb of genomics data via a repeated and merged bloom filter (rambo)
Gaurav Gupta
,
Minghao Yan
,
Benjamin Coleman
,
Bryce Kille
,
Dr. R.A. Leo Elworth
,
Tharun Medini
,
Todd Treangen
,
Anshumali Shrivastava
Faster pan-genome construction for efficient differentiation of naturally occurring and engineered plasmids with plaster
Dr. Qi Wang
,
RA Elworth
,
Tian Rui Liu
,
Todd J Treangen
SeqScreen: a biocuration platform for robust taxonomic and biological process characterization of nucleic acid sequences of interest
Dreycey Albin
,
Dan Nasko
,
Dr. R.A. Leo Elworth
,
Jacob Lu
,
Dr. Advait Balaji
,
Christian Diaz
,
Nidhi Shah
,
Jeremy Selengut
,
Chris Hulme-Lowe
,
Pravin Muthu
,
others
Limitations of current approaches for reference-free, graph-based variant detection
Amelia Bateman
,
Todd J Treangen
,
Mihai Pop
De novo likelihood-based measures for comparing metagenomic assemblies
Christopher M Hill
,
Irina Astrovskaya
,
Howard Huang
,
Sergey Koren
,
Atif Memon
,
Todd J Treangen
,
Mihai Pop
»
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