2

Improved Annotation of Sequences of Concern to Better Understand Biorisk in Engineered Microbes

Gene D Godbold, Todd J Treangen, Krista L Ternus

Evolutionary and Spatiotemporal Analysis Reveal Multiple Introductions and Cryptic Transmission of Sars-Cov-2 VOC/VOI in Malta

Pilar Gallego-Garcı́a, Dr. Yunxi Liu, Nid́ia Sequeira Trovão, Vincent Pan, Chirag Goel, Mark Briffa, Chanelle Cilia, Christopher Barbara, Rebecca Borg, Laura Grech, others

Prek-12 School and Citywide Wastewater Monitoring of the Enteric Viruses Astrovirus, Rotavirus, and Sapovirus

Madeline Wolken, Michael Wang, Julia Schedler, Roberto H Campos, Katherine B Ensor, Loren Hopkins, Todd Treangen, Lauren B Stadler

Graph-based variant discovery reveals novel dynamics in the human microbiome

Harihara Subrahmaniam Muralidharan, Jacquelyn S Michaelis, Jay Ghurye, Todd Treangen, Sergey Koren, Marcus Fedarko, Mihai Pop

Graph-based variant discovery reveals novel dynamics in the human microbiome

Harihara Subrahmaniam Muralidharan, Jacquelyn S Michaelis, Jay Ghurye, Todd Treangen, Sergey Koren, Marcus Fedarko, Mihai Pop

GraSSRep: Graph-Based Self-Supervised Learning for Repeat Detection in Metagenomic Assembly

Ali Azizpour, Dr. Advait Balaji, Todd J Treangen, Santiago Segarra

Identification of a novel CG307 sub-clade in third-generation-cephalosporin-resistant Klebsiella pneumoniae causing invasive infections in the USA

Selvalakshmi Selvaraj Anand, Chin-Ting Wu, Jordan Bremer, Micah Bhatti, Todd J Treangen, Awdhesh Kalia, Samuel A Shelburne, William C Shropshire

MetaCompass: Reference-guided Assembly of Metagenomes

Tu Luan, Victoria Cepeda, Bo Liu, Zac Bowen, Ujjwal Ayyangar, Mathieu Almeida, Christopher M Hill, Sergey Koren, Todd J Treangen, Adam Porter, others

Microbial Community Profiling Protocol with Full-length 16S rRNA Sequences and Emu

Dr. Kristen Curry, Sirena Soriano, Michael G Nute, Sonia Villapol, Alexander Dilthey, Todd J Treangen

Parsnp 2.0: Scalable Core-Genome Alignment for Massive Microbial Datasets

Bryce Kille, Michael G Nute, Victor Huang, Eddie Kim, Adam M Phillippy, Todd J Treangen