Treangen Lab @ Rice
Treangen Lab @ Rice
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Current progress and open challenges for applying deep learning across the biosciences
Dr. Nicolae Sapoval
,
Amirali Aghazadeh
,
Michael G Nute
,
Dinler A Antunes
,
Dr. Advait Balaji
,
Richard Baraniuk
,
CJ Barberan
,
Ruth Dannenfelser
,
Chen Dun
,
Mohammadamin Edrisi
,
others
De novo identification of microbial contaminants in low microbial biomass microbiomes with Squeegee
Dr. Yunxi Liu
,
Dr. R.A. Leo Elworth
,
Michael D Jochum
,
Kjersti M Aagaard
,
Todd J Treangen
Direct Comparison of RT-ddPCR and Targeted Amplicon Sequencing for SARS-CoV-2 Mutation Monitoring in Wastewater (preprint)
Esther Lou
,
Dr. Nicolae Sapoval
,
Camille McCall
,
Lauren Bauhs
,
Russell Carlson-Stadler
,
Prashant Kalvapalle
,
Yanlai Lai
,
Kyle Palmer
,
Ryker Penn
,
Whitney Rich
,
others
Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data
Dr. Kristen Curry
,
Dr. Qi Wang
,
Michael G Nute
,
Alona Tyshaieva
,
Elizabeth Reeves
,
Sirena Soriano
,
Qinglong Wu
,
Enid Graeber
,
Patrick Finzer
,
Werner Mendling
,
others
Enabling earlier detection of recently emerged SARS-CoV-2 variants of concern in wastewater
Dr. Nicolae Sapoval
,
Dr. Yunxi Liu
,
Esther G Lou
,
Loren Hopkins
,
Katherine B Ensor
,
Rebecca Schneider
,
Lauren B Stadler
,
Todd J Treangen
Fecal microbiota transplantation derived from Alzheimer’s disease mice worsens brain trauma outcomes in wild-type controls
Sirena Soriano
,
Kristen Curry
,
Dr. Qi Wang
,
Elsbeth Chow
,
Todd J Treangen
,
Sonia Villapol
Infectious severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in exhaled aerosols and efficacy of masks during early mild infection
Oluwasanmi O Adenaiye
,
Jianyu Lai
,
P Jacob Bueno de Mesquita
,
Filbert Hong
,
Somayeh Youssefi
,
Jennifer German
,
SH Sheldon Tai
,
Barbara Albert
,
Maria Schanz
,
Stuart Weston
,
others
KOMB: K-core based de novo characterization of copy number variation in microbiomes
Dr. Advait Balaji
,
Dr. Nicolae Sapoval
,
Charlie Seto
,
Dr. R.A. Leo Elworth
,
Dr. Yilei Fu
,
Michael G Nute
,
Tor Savidge
,
Santiago Segarra
,
Todd J Treangen
Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters
Pilar Gallego-Garcı́a
,
Nair Varela
,
Nuria Estévez-Gómez
,
Loretta De Chiara
,
Iria Fernández-Silva
,
Diana Valverde
,
Dr. Nicolae Sapoval
,
Todd J Treangen
,
Benito Regueiro
,
Jorge Julio Cabrera-Alvargonzález
,
others
Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters
Pilar Gallego-García
,
Nair Varela
,
Nuria Estévez-Gómez
,
Loretta De Chiara
,
Iria Fernández-Silva
,
Diana Valverde
,
Dr. Nicolae Sapoval
,
Todd J Treangen
,
Benito Regueiro
,
Jorge Julio Cabrera-Alvargonzález
,
Víctor del Campo
,
Sonia Pérez
,
David Posada
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