To petabytes and beyond: recent advances in probabilistic and signal processing algorithms and their application to metagenomics

Publication
Nucleic acids research 48, no. 10 (2020): 5217-5234. [DOI:10.1093/nar/gkaa265]
R.A. Leo Elworth
R.A. Leo Elworth
NLM Postdoctoral Fellow

Leo (NLM Postdoctoral Fellow, primary mentor Prof. Lauren Stadler, secondary mentor Prof. Todd Treangen) received his PhD in Computer Science at Rice University in 2019 working on statistical modeling of DNA sequence evolution. He was advised by Dr. Luay Nakhleh, the J.S. Abercrombie Professor and Chair of the Department of Computer Science at Rice. Since joining at Rice, Leo was awarded a graduate research fellowship from the National Library of Medicine, has published work in computational biology in journals such as Bioinformatics, presented research at scientific conferences like RECOMB-CG in Barcelona and WABI in Helsinki, and contributed to a soon to be released book on computational modeling of evolutionary histories of genomes.

Qi Wang
Qi Wang
PhD student

Dr. Wang finished her PhD in the Treangen Lab December 2021. Previously, Dr. Wang obtained B.S. degrees in Biotechnology from Hong Kong Baptist University and MS in Biotechnology from Northwestern University. During her undergraduate, she did research in University of Chinese Academy of Sciences, Beijing University of Chemical Technology and Capital Medical University, focusing on using bioinformatics and experimental approaches to solve various life science problems, including synthetic biology, developmental biology, oncology and drug discovery. Her interest is to improve human health and environment by understanding complex biology data.

Advait Balaji
Advait Balaji
PhD student

Advait (4th year PhD student) obtained a dual degree, B.E Computer Science and MS Biological Sciences from BITS, Pilani in India. During his undergraduate degree, he received the Khorana Scholarship (2016) from the Indo-US Science and Technology Forum and also a thesis fellowship (2017-18) to work at Icahn School of Medicine, Mount Sinai, NY. At Mount Sinai, he worked on creating a Sub-cellular process-based ontology that predicts whole cell function using Natural Language Processing. His research interests are at the intersection of genomic data science and designing efficient algorithms to analyze genomic data.

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